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GENOMICS AND BIOINFORMATICS GRAZ
tug logo igb logo © 2011 Institute for Genomics and Bioinformatics · Graz University of Technology · Petersgasse 14, 8010 Graz, Austria
Tel +43-316-873-5331 · Fax +43-316-873-5340 · URL http://genome.tugraz.at · RSS feed icon  · Welcome to Graz · Map
PUBLICATIONS

Eduati F, Di Camillo B, Karbiener M, Scheideler M, Corà D, Caselle M, Toffolo GM.
Dynamic modeling of miRNA-mediated feed-forward loops.
Journal of Computational Biology. 2012. 19(2):188-199  |  PMID: 22300320
 
Zeeberg BR, Reinhold W, Snajder R, Thallinger GG, Weinstein JN, Kohn KW, Pommier Y.
Functional Categories Associated with Clusters of Genes that
are Co-Expressed across the NCI-60 Cancer Cell Lines.
PLoS ONE. 2012. 7(1):e30317  |  PMID: 22291933
 
Thallinger GG, Obermayr E, Charoentong P, Tong D, Trajanoski Z, Zeillinger R.
A Sequence Based Validation of Gene Expression Microarray Data.
American Journal of Bioinformatics. 2012. 1(1):1-9  |  DOI: 10.3844/ajbsp.2012.1.9
 
Perdan-Pirkmajer K, Thallinger GG, Snoj N, Cucnik S, Zigon P, Kveder T,
Logar D, Praprotnik S, Tomsic M, Sodin-Semrl S, Ambrozic A.
Autoimmune response following influenza vaccination
in patients with autoimmune inflammatory rheumatic disease.
Lupus. 2012. 21(2):175-183  |  PMID: 22235050
 
Lakota K, Thallinger GG, Sodin-Semrl S, Rozman B, Ambrozic A, Tomsic M, Praprotnik S, Cucnik S,
Mrak-Poljsak K, Ceribelli A, Cavazzana I, Franceschini F, Vencovsky J, Czirjak L, Varju C,
Steiner G, Aringer M, Stamenkovic B, Distler O, Matucci-Cerinic M, Kveder T.
International cohort study of 73 anti-Ku positive patients: association of p70/p80 anti-Ku antibodies
with joint/bone features and differentiation of disease populations using principle component analysis.
Arthritis Res Ther. 2012. 14(1):R2. |  PMID: 22226402
 
Jöhrer K, Obkircher M, Neureiter D, Parteli J, Zelle-Rieser C, Maizner E, Kern J,
Hermann M, Hamacher F, Merkel O, Wacht N, Zidorn C, Scheideler M, Greil R.
Anti-myeloma activity of the sesquiterpene lacton cnicin: impact on Pim-2 kinase as a novel therapeutic target.
Journal of Molecular Medicine. 2011.  |  PMID: 22205266
 
Aflaki E, Balenga NA, Luschnig-Schratl P, Wolinski H, Povoden S, Chandak PG, Bogner-Strauss JG, Eder S, Konya V, Kohlwein SD, Heinemann A, Kratky D.
Impaired Rho GTPase activation abrogates cell polarization and migration in macrophages with defective lipolysis.
Cell Mol Life Sci. 2011. 68(23):3933-3947  |  PMID: 21533980
 
Fauland A, Koefeler H, Troetzmueller M, Knopf A, Hartler J, Eberl A, Chitraju C, Lankmayr E, Spener F
A comprehensive method for lipid profiling by liquid chromatography-ion cyclotron resonance mass spectrometry.
J Lipid Res. 2011. 52(12):2314-2322  |  PMID: 21960706
 
Marx H, Graf AB, Tatto NE, Thallinger GG, Mattanovich D, Sauer M
Genome Sequence of the Ruminal Bacterium Megasphaera elsdenii.
J Bacteriol. 2011. 193(19):5578-5579  |  PMID: 21914887
 
Karbiener M, Neuhold C, Opriessnig P, Prokesch A, Bogner-Strauss JG, Scheideler M
MicroRNA-30c promotes human adipocyte differentiation and co-represses PAI-1 and ALK2
RNA Biology. 2011. 8(5):850-860  | PMID: 21878751
 
Pinent M, Prokesch A, Hackl H, Voshol PJ, Klatzer A, Walenta E, Panzenboeck U,
Kenner L, Trajanoski Z, Hoefler G, Bogner-Strauss JG.
Adipose Triglyceride Lipase and Hormone-Sensitive Lipase Are Involved in
Fat Loss in JunB-Deficient Mice.
Endocrinology. 2011. 152(7):2678-2689  |  PMID: 21540289
 
Hakim-Weber R, Krogsdam AM, Jørgensen C, Fischer M, Prokesch A,
Bogner-Strauss JG, Bornstein SR, Hansen JB, Madsen L, Kristiansen K,
Trajanoski Z, Hackl H.
Transcriptional regulatory program in wild-type and retinoblastoma
gene-deficient mouse embryonic fibroblasts during adipocyte differentiation.
BMC Res Notes. 2011. 4:157  |  PMID: 21615920
 
Hofer E, Laschober GT, Hackl M, Thallinger GG, Lepperdinger G,
Grillari J, Jansen-Durr P, Trajanoski Z.
GiSAO.db: a database for ageing research.
BMC Genomics. 2011. 12(1):262  |  PMID: 21609420
 
Prokesch A, Lazar MA
A hormone sends instant messages to the genome.
Cell. 2011. 145(4):499-501  |  PMID: 21565609
 
Küberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T,
Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Pühler A, Schwab H, Glieder A, Pichler H.
High-quality genome sequence of Pichia pastoris CBS7435
J Biotechnol. 2011. 154(4):312-320  |  PMID: 21575661
 
Hörl G, Wagner A, Cole LK, Malli R, Reicher H, Kotzbeck P,
Köfeler H, Höfler G, Frank S, Bogner-Strauss JG, Sattler W, Vance DE, Steyrer E. Sequential synthesis and methylation of phosphatidylethanolamine promote lipid droplet biosynthesis and stability in tissue culture and in vivo.
J Biol Chem. 2011:286(19):17338-17350  |  PMID: 21454708
 
Hartler J, Trötzmüller M, Chitraju C, Spener F, Köfeler HC, Thallinger GG.
Lipid Data Analyzer: Unattended Identification and Quantitation of
Lipids in LC-MS Data.
Bioinformatics. 2011. 27(4):572-577  |  PMID: 21169379
 
Lakota K, Thallinger GG, Cucnik S, Bozic B, Mrak-Poljsak K, Ambrozic A, Rozman B, Blinc A,
Tomsic M, Sodin-Semrl S.
Could antibodies against Serum Amyloid A function as physiological regulators in humans?
Autoimmunity. 2011. 44(2):149-158  |   PMID: 20701456
 
Pabinger S, Rader R, Agren R, Nielsen J, Trajanoski Z.
MEMOSys: Bioinformatics platform for genome-scale metabolic models.
BMC Syst Biol. 2011. 5(1):20  |  PMID: 21276275
 
Prokesch A, Bogner-Strauss JG, Hackl H, Rieder D, Neuhold C,
Walenta E, Krogsdam A, Scheideler M, Papak C, Wong WC, Vinson C,
Eisenhaber F, Trajanoski Z.
Arxes: retrotransposed genes required for adipogenesis.
Nucleic Acids Res. 2010. 39(8):3224-3239  |  PMID: 21177646
 
Laschober GT, Ruli D, Hofer E, Muck C, Carmona-Gutierrez D, Ring J, Hutter E, Ruckenstuhl C,
Micutkova L, Brunauer R, Jamnig A, Trimmel D, Herndler-Brandstetter D, Sampson N,
Breitenbach M, Fröhlich KU, Grubeck-Loebenstein B, Berger P, Wieser M, Grillari-Voglauer R,
Thallinger GG, Grillari J, Trajanoski Z, Madeo F, Lepperdinger G, Jansen-Dürr P.
Identification of evolutionarily conserved genetic regulators of
cellular aging.
Aging Cell. 2010. 9(6):1084-1097  |  PMID: 20883526
 
Merkel O, Hamacher F, Laimer D, Sifft E, Trajanoski Z, Scheideler M,
Egger G, Hassler MR, Thallinger C, Schmatz A, Turner SD, Greil R,
Kenner L.
Identification of differential and functionally active miRNAs in both
anaplastic lymphoma kinase (ALK)+ and ALK- anaplastic large-cell
lymphoma.
Proc Natl Acad Sci U S A. 2010. 14;107(37):16228-16233  |   PMID: 20805506
 
Bogner-Strauss JG, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A,
Lass A, Pinent M, Wong WC, Eisenhaber F, Trajanoski Z. Reconstruction of gene association network reveals a
transmembrane protein required for adipogenesis and
targeted by PPARg.
Cell Mol Life Sci. 2010. 67(23):4049-4064   |   PMID: 20552250
 
Zaragosi LE, Wdziekonski B, Villageois P, Keophiphath M, Maumus M, Tchkonia T, Bourlier V, Mohsen-Kanson T, Ladoux A, Elabd C, Scheideler M, Trajanoski Z, Takashima Y, Amri EZ, Lacasa D, Sengenes C, Ailhaud G, Clément, K, Bouloumie A, Kirkland, JL, Dani C. Activin A plays a critical role in proliferation and differentiation of human adipose progenitors.
Diabetes. 2010. 59(10):2513-2521   |   PMID: 20530742
 
Ubaida Mohien C, Hartler J, Breitwieser F, Rix U, Remsing Rix L, Winter GE, Thallinger GG, Bennett KL, Superti-Furga G, Trajanoski Z, Colinge J. MASPECTRAS 2: An Integration and Analysis Platform for Proteomic Data.
Proteomics. 2010. 10(14):2719-2722   |   PMID: 20455215
 
Nusshold C, Kollroser M, Koefeler H, Rechberger G, Reicher H, Uellen A, Bernhart E, Waltl S, Kratzer I, Hermetter A, Hackl H, Trajanoski Z, Hrzenjak A, Malle E, Sattler W. Hypochlorite-modification of sphingomyelin generates chlorinated lipid species that induce apoptosis and proteome alterations in dopaminergic PC12 neurons in vitro.
Free Radic Biol Med. 2010. 48(12):1588-1600   |   PMID: 20226853
 
Mlecnik B, Sanchez-Cabo F, Charoentong P, Bindea G, Pages F, Berger A, Galon J, Trajanoski Z. Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction.
BMC Genomics. 2010. 11 (Suppl 1):7   |   PMID: 20158878
 
Hackl M, Brunner S, Fortschegger K, Schreiner C, Micutkova L, Mück C, Laschober GT, Lepperdinger G, Sampson N, Berger P, Herndler-Brandstätter D, Wieser M, Kühnel H, Strasser A, Rinnerthaler M, Breitenbach M, Mildner M, Eckhart L, Tschachler E, Trost A, Bauer JW, Papak C, Trajanoski Z, Scheideler M, Grillari-Voglauer R, Grubeck-Loebenstein B, Jansen-Dürr P, Grillari J. miR-17, miR-19b, miR-20a and miR-106a are down-regulated in human aging.
Aging Cell. 2010. 9(2):291-296  |   PMID: 20089119
 
Mlecnik B, Tosolini M, Charoentong P, Kirilovsky A, Bindea G, Berger A, Camus M, Gillard M, Bruneval P, Fridman WH, Pages F, Trajanoski Z, Galon J. Biomolecular network reconstruction identifies T cell homing factors associated with survival in colorectal cancer.
Gastroenterology. 2010. 138(4):1429-1440   |   PMID: 19909745
 
Wieser R, Scheideler M, Hackl H, Engelmann M, Schneckenleithner C, Hiden K, Papak C, Trajanoski Z, Sil H, Fonatsch C. microRNAs in acute myeloid leukemia: expression patterns, correlations with genetic and clinical parameters, and prognostic significance.
Genes Chromosomes Cancer. 2009. 49(3):193-203  |   PMID: 20013895
 
Karbiener M, Fischer C, Nowitsch S, Opriessnig P, Papak C, Ailhaud G, Dani C, Amri EZ, Scheideler M. microRNA miR-27b impairs human adipocyte differentiation and targets PPARgamma.
Biochem Biophys Res Commun. 2009. 390(2):247-251  |   PMID: 19800867
 
Stocker G, Fischer M, Rieder D, Bindea G, Kainz S, Oberstolz M, McNally JG, Trajanoski Z. iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.
BMC Bioinformatics. 2009. 10:390  |   PMID: 19941647
 
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartman M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open Source, platform-independent, community-supported software for describing and comparing microbial communities.
Appl Environ Microbiol. 2009. 75:7537-7541   |   PMID: 19801464
 
Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z. QPCR: Application for real-time PCR data management and analysis.
BMC Bioinformatics. 2009. 10:268  |   PMID: 19712446
 
Konrad TA, Karger A, Hackl H, Schwarzinger I, Herbacek I, Wieser R. Inducible expression of EVI1 in human myeloid cells causes phenotypes consistent with its role in myelodysplastic syndromes.
J Leukoc Biol. 2009. 86:813-822  |   PMID: 19605700
 
Geigl J, Obenauf A, Waldspuehl-Geigl J, Hoffmann E, Auer M, Hörmann M, Fischer M, Trajanoski Z, Schenk M, Bambusch L, Speicher M. Identification of small gains and losses in single cells after whole genome amplification on tiling oligo arrays.
Nucl Acids Res. 2009. 37:e105  |   PMID: 19541849
 
Prokesch A*, Hackl H*, Hakim-Weber R, Bornstein SR, Trajanoski Z. Novel insights into adipogenesis from omics data.
Curr Med Chem. 2009. 16:2952-2964  |   PMID: 19689276
 
Pirnia F, Pawlak M, Thallinger GG, Gierke B, Templin MF, Kappeler A, Betticher DC, Gloor B, Borner MM. Novel Functional Profiling Approach Combining Reverse Phase Protein Microarrays and Human 3D ex vivo Tissue Cultures: Expression of Apoptosis Related Proteins in Human Colon Cancer.
Proteomics. 2009. 9:3535-3548  |  PMID: 19609961
 
Pages F, Kirilovsky A, Mlecnik B, Tosolini M, Bindea G, Lagorce C, Wind P, Marliot F, Bruneval P, Zatloukal K, Trajanoski Z, Berger A, Fridman W-H, Galon J. The in situ cytotoxic and memory T cells predict outcome in early-stage colorectal cancer patients.
J Clin Oncol. 2009. 27:5944-5951  |  PMID: 19858404
 
Bindea G*, Mlecnik B*, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman W-H, Pages F, Trajanoski Z, Galon J. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
Bioinformatics. 2009. 25:1091-1093  |   PMID: 19237447
 
Steinkellner G, Rader R, Thallinger GG, Kratky C, Gruber K. VASCo: computation and visualization of annotated protein surface contacts.
BMC Bioinformatics. 2009. 10:32  |   PMID: 19166624
 
Camus M, Tosolini M, Mlecnik B, Pagès F, Kirilovsky A, Berger A, Costes A, Bindea G, Charoentong P, Bruneval P, Trajanoski Z, Fridman W-H, Galon J. Coordination of intratumoral immune reaction and human colorectal cancer recurrence.
Cancer Res. 2009. 69:2685-2693  |   PMID: 19258510
 
Rainer J, Ploner C, Jesacher S, Ploner A, Eduardoff M, Mansha M, Wasim M, Renate Panzer-Grümayer R, Trajanoski Z, Niederegger H, Kofler R. Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia.
Leukemia. 2009. 23:746-752  |   PMID: 19148136
 
Scheideler M, Elabd C*, Zaragosi LE*, Chiellini C, Hackl H, Sanchez-Cabo F, Yadav S, Duszka K, Friedl G, Papak C, Prokesch A, Windhager R, Ailhaud G, Dani C, Amri E-Z, Trajanoski Z. Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis.
BMC Genomics. 2008. 9:340  |   PMID: 18637193
 
Chiellini C, Grenningloh G, Cochet O, Scheideler M, Trajanoski Z, Ailhaud G, Dani C, E-Z Amri. Stathmin-like 2, a developmentally-associated neuronal marker, is expressed and modulated during osteogenesis of human mesenchymal stem cells.
Biochem Biophys Res Commun. 2008. 374:64-68  |   PMID: 18611392
 
Elabd C, Basillais A, Beaupied H Breil V, Wagner N, Scheideler M, Zaragosi LE, Massiera F, Lemichez E, Trajanoski Z, Carle GF, Euller-Ziegler L, Ailhaud G, Benhamou CL, Dani C, Amri EZ. Oxytocin controls differentiation of human mesenchymal stem cells and reverses osteoporosis.
Stem Cells. 2008. 26:2399-2407  |   PMID: 18583541
 
Pinent M*, Hackl H*, Burkard TR, Prokesch A, Scheideler M, Paar C, Hämmerle G, Zechner R, Trajanoski Z, Strauss JG. Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase deficient mice.
Genomics. 2008. 92:26-32  |  PMID: 18572100
 
Merkel O, Heyder C, Asslaber D, Hamacher F, Holler C, Stöcher M, Scheideler M, Paar C, Prokesch A, Trajanoski Z, Tinhofer I, Greil R. Arsenic trioxide induces apoptosis preferentially in B-CLL cells of patients with unfavourable prognostic factors including del17p13.
J Mol Med. 2008. 86:541-552  |   PMID: 18297255
 
Mueller F, Wach P, McNally JG. Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative FRAP.
Biophys J. 2008. 94:3323-3339  |   PMID: 18199661
 
Smit van Dixhoorn MG, Munir R, Sussman G, Stad R, de Haan M, van der Hoeven T, Rauwerda H, Breit TM, Thallinger GG, Wadee AA. Gene expression profiling of suppressor mechanisms in tuberculosis.
Mol Immunol. 2008. 45:1573-1586  |   PMID: 18068800
 
Nebauer R, Schuiki I, Kulterer B, Trajanoski Z, Daum G. The phosphatidylethanolamine level of yeast mitochondria is affected by the mitochondrial components Oxa1p and Yme1p.
FEBS J. 2007. 274:6810-6190  |   PMID: 17976194
 
Hartler J, Thallinger GG, Stocker G, Sturn A, Burkard TR, Körner E, Rader R, Schmidt A, Mechtler K, Trajanoski Z. MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
BMC Bioinformatics. 2007. 8:197  |   PMID: 17567892
 
Müller WG, Rieder D, Karpova TS, John S, Trajanoski Z, McNally JG. Organization of chromatin and histone modifications at a transcription site.
J Cell Biol. 2007. 177:957-967  |   PMID: 17576795
 
Kowalska A, Bozsaky E, Ramsauer T, Rieder D, Bindea G, Lorch T, Trajanoski Z, Ambros PF. A new platform linking chromosomal and sequence information.
Chromosome Res. 2007. 15:327-340  |   PMID: 17406992
 
Pohn B, Gerlach J, Scheideler M, Katz H, Uray M, Bischof H, Klimant I, Schwab H. Micro-colony array based high throughput platform for enzyme library screening.
J Biotechnol. 2007. 129:162-170   |   PMID: 17174002
 
Kulterer B, Friedl G, Jandrositz A, Sanchez-Cabo F, Prokesch A, Paar C, Scheideler M, Windhager R, Preisegger K-H, Trajanoski Z. Gene Expression Profiling of Human Mesenchymal Stem Cells derived from Bone Marrow during Expansion and Osteoblast Differentiation.
BMC Genomics. 2007. 8:70  |   PMID: 17352823
 
Thallinger GG, Baumgartner K, Pirklbauer M, Uray M, Pauritsch E, Mehes G, Buck CR, Zatloukal K, Trajanoski Z. TAMEE: data management and analysis for tissue microarrays.
BMC Bioinformatics. 2007. 8:81  |   PMID: 17343750
 
Galon J, Costes A, Sanchez-Cabo F, Kirilovsky A, Mlecnik B, Lagorce C, Tosolini M, Camus M, Berger A, Wind P, Zinzindohoué F, Bruneval P, Cugnenc P-H, Trajanoski Z, Fridman W-H, Pagès F. Type, density, and location of immune cells within human colorectal tumors predicts clinical outcome.
Science. 2006. 313:1960-1964  |   PMID: 17008531
 
Tschernatsch MMO, Mlecnik B, Trajanoski Z, Zechner R, Zimmermann R. LPL-mediated lipolysis of VLDL induces an upregulation of AU-rich mRNAs and an activation of HuR in endothelial cells.
Atherosclerosis. 2006. 189:310-317  |   PMID: 16494882
 
Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z. CARMAweb: comprehensive R- and BioConductor-based web service for microarray data analysis.
Nucleic Acids Res. 2006. 34:W498-W503  |   PMID: 16845058
 
Gerlach J, Pohn B, Karl W, Scheideler M, Uray M, Bischof H, Schwab H, Klimant I. Planar optical sensors: A tool for screening enzyme activity in high density cell arrays.
Sensor Actuat B-Chem. 2005. 114:984-994  |  [abstract]
 
Hackl H*, Burkard TR*, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Molecular processes during fat cell development revealed by gene expression profiling and functional annotation.
Genome Biol. 2005. 6:R108  |   PMID: 16420668
 
Pages F, Berger A, Camus M, Sanchez-Cabo F, Costes A, Molidor R, Mlecnik B, Kirilovsky A, Nilsson M, Damotte D, Meatchi T, Bruneval P, Cugnenenc PH, Trajanoski Z, Fridman WH, Galon J. Effector memory T cells, early metastasis, and survival in colorectal cancer.
N Engl J Med. 2005. 353:2654-2666  |   PMID: 16371631
 
Di Camillo B, Sanchez-Cabo F, Toffolo G, Nair SK, Trajanoski Z, Cobelli C. A quantization method based on threshold optimization for microarray short time series.
BMC Bioinformatics. 2005. 6 Suppl 4: S11  |   PMID: 16351737
 
Smirnova JB, Selley JN, Sanchez-Cabo F, Carroll K, Eddy AA,McCarthy JEG, Hubbard SJ, Pavitt GD, Grant CM, Ashe MP. Global gene expression profiling reveals widespread, yet distinctive translational responses to different eIF2B-targeting stress pathways.
Mol Cell Biol. 2005. 25:9340-9349  |   PMID: 16227585
 
Sturn A, Maurer M, Molidor R, Trajanoski Z. Systems for the management of pharmacogenomic information.
Methods Mol Biol. 2005. 311:193-208  |   PMID: 16100409
 
Bernroider E, Brehm A, Krssak M, Anderwald C, Trajanoski Z, Cline G, Shulman GI, Roden M. The Role of Intramyocellular Lipids During Hypoglycemia in Patients With Intensively Treated Type 1 Diabetes.
J Clin Endocrinol Metab. 2005. 90:5559-5565  |  PMID: 15998784
 
Vogl C*, Sanchez Cabo F*, Stocker G, Hubbard S, Wolkenhauer O, Trajanoski Z. A fully Bayesian model to cluster gene expression profiles.
Bioinformatics. 2005. 21 Suppl 2: ii130-ii136  |  PMID: 16204092
 
Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z. MARS: Microarray analysis, retrieval and storage system.
BMC Bioinformatics. 2005. 6:101  |  PMID: 15836795
 
Pinent M, Bladeacute; MC, Salvadó MC, Arola L, Hackl H, Quackenbush J, Trajanoski Z, Ardévol. A Grape-seed derived procyanidins interfere with adipogenesis of 3T3-L1 cells at the onset of differentiation.
Int J Obes. 2005. 29:934-941  |  PMID: 15917849
 
Mlecnik B, Scheideler M, Hackl H, Hartler J, Sanchez-Cabo F , Trajanoski Z. PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.
Nucleic Acids Res. 2005. 33: W633-W637  |  PMID: 15980551
 
Yu JS, Ongarello S, Fiedler R, Chen RW, Toffolo G, Cobelli C, Trajanoski Z. Ovarian Cancer Identification Based on Dimensionality Reduction for High-Throughput Mass Spectrometry Data.
Bioinformatics. 2005. 21:2200-2209  |  PMID: 15784749
 
Kals M, Natter K, Thallinger GG, Trajanoski Z, Kohlwein SD. YPL.db(2): the yeast protein localization database, version 2.0.
Yeast. 2005. 22:213-218  |  PMID: 15704222
 
Hackl H, Maurer M, Mlecnik B, Hartler J, Stocker G, Miranda-Saavedra D, Trajanoski Z. GOLD.db: Genomics of lipid-asociated disorders database.
BMC Genomics. 2004. 5:93  |  PMID: 15588328
 
Müller WG, Rieder D, Kreth G, Cremer C, Trajanoski Z, McNally JG. Generic features of tertiary chromatin structure as detected in natural chromosomes.
Mol Cell Biol. 2004. 24:9359-9370  |  PMID: 15485905
 
Pieler R, Sanchez-Cabo F, Hackl H, Thallinger GG, Trajanoski Z. ArrayNorm: Comprehensive Normalization and Analysis of Microarray Data.
Bioinformatics. 2004. 20:1971-1973  |  PMID: 15073026
 
Stocker G, Rieder D, Trajanoski Z. ClusterControl: A Web Interface for Distributing and Monitoring Bioinformatics Applications on a Linux Cluster.
Bioinformatics 2004. 20:805-807  |  PMID: 14751976
 
Hackl H, Sanchez Cabo F, Sturn A, Wolkenhauer O, Trajanoski Z. Analysis of DNA Microarray Data.
Curr Top Med Chem. 2004. 4:1355-1368  |  PMID: 15379650
 
Molidor R, Sturn A, Maurer M, Trajanoski Z. New Trends in Bioinformatics: From Genome Sequence to Personalized Medicine.
Experimental Gerontology 2003. 38:1031-1036  |  PMID: 14580855
 
Regittnig W, Ellmerer M, Fauler G, Sendlhofer G, Trajanoski Z, Leis HJ, Schaupp L, Wach P, Pieber TR. Assessment of transcapillary glucose exchange in human skeletal muscle and adipose tissue.
Am J Physiol Endocrinol Metab. 2003. 285:E241-E251  |  PMID: 12684220
 
Sturn A, Mlecnik B, Pieler R, Rainer J, Truskaller T, Trajanoski Z. Client-Server Environment for High-Performance Gene Expression Data Analysis.
Bioinformatics. 2003. 19:772-773  |  PMID: 12691990
 
Trost E, Hackl H, Maurer M, Trajanoski Z. Java Editor for Biological Pathways.
Bioinformatics. 2003. 19:786-787  |   PMID: 12691997
 
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J. TM4: a free, open-source system for microarray data management and analysis.
Biotechniques. 2003. 34:374-778  |  PMID: 12613259
 
Thallinger GG, Trajanoski S, Stocker G, Trajanoski Z. Information management systems for pharmacogenomics.
Pharmacogenomics. 2002. 3:651-667  |  PMID: 12223050
 
Habeler G, Natter K, Thallinger GG, Crawford ME, Kohlwein SD, Trajanoski Z: YPL.db: The yeast protein localization database.
Nucleic Acids Res. 2002. 30:80-83  |  PMID: 11752260
 
Sturn A, Quackenbush J, Trajanoski Z. Genesis: Cluster analysis of microarray data.
Bioinformatics. 2002. 18:207-208  |  PMID: 11836235
 
Maurer M, Trajanoski Z, Frey G, Hiroi N, Galon J, Chrousos GP, Gold PW, Scherbaum WA, Bornstein SR. Differential Gene Expression Profile of Glucocorticoids, Testosterone, and Dehydroepiandrosterone on Human Immune Cells.
Horm Metab Res. 2001. 33:691-695  |  PMID: 11753752