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THALLINGER LAB
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DOCUMENTATION

INSTRUCTIONS

mpirun -np 12 swarm -i "/path/to/inputfiles" -o "/path/to/outputfiles" -c "command <inputfile> <outputfile>"

takes all files from /path/to/inputfiles and executes "command /path/to/inputfiles/xxxxx" and redirects it to /path/to/outputfiles/xxxxx_yy, where xxxxx stands for the filename and yy for the worker ID.

Example: mpirun -np 24 swarm -i "/etc" -o "/tmp" -c "ls <inputfile> > <outputfile>"
 
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