| [Journals] [Meetings] [Institutions][Tools] [microRNA][NGS][Bioinformatics] [Microarrays] [Databases] [Glossary] |
RELATED LINKS |
JOURNALS
|
| Am Journal of Physiology |
| Annual Reviews |
| Biochemical Journal |
| Bioinformatics |
| Biostatistics |
| Biotechniques |
| BMC Bioinformatics |
| BMC Genomics |
| BMC Medical Genomics |
| BMC Systems Biology |
| Briefings in Bioinformatics |
| Cell |
| Cell Metabolism |
| Comparative and Functional Genomics |
| Current Biology |
| Developmental Cell |
| Diabetes |
| EMBO Journal |
| Endocrine Reviews |
| FEBS Letters |
| Functional & Integrative Genomics |
| Gene |
| Genes & Development |
| Genome Biology |
| Genome Medicine |
| Genome Research |
| Genomics |
| Human Molecular Genetics |
| International Journal of Obesity |
| Journal of Biological Chemistry |
| Journal of Biology |
| Journal of Lipid Research |
| Journal of Molecular Biology |
| Mammalian Genome |
| Molecular and Cellular Biology |
| Molecular Cell |
| Molecular Systems Biology |
| Molecular&Cellular Proteomics |
| Nature |
| Nature Biotechnology |
| Nature Cell Biology |
| Nature Genetics |
| Nature Medicine |
| Nature Methods |
| Nature Review Genetics |
| New England Journal of Medicine |
| Nucleic Acid Research |
| Physiological Genomics |
| PLoS Biology |
| PLoS Computational Biology |
| PLoS Genetics |
| PLoS Medicine |
| PLoS ONE |
| PNAS |
| RNA |
| Science |
| Stem Cells |
| The Am. Journal of Human Genetics |
| The Journal of Cell Biology (JCB) |
| The Journal of Clinical Endocrinology & Metabolism |
| The Journal of Clinical Investigation |
| The Journal of Computational Biology |
MEETINGS
|
Adipose Tissue Biology (Keystone Symposia J3)
Keystone, CO, USA, Jan 24-29, 2010
|
CHI Next Generation Sequencing
San Diego, CA, USA, Mar 15-19, 2010
|
Dynamics of Eukaryotic Transcription during Development (C4)
Big Sky, MO, USA, Apr 07-12, 2010
|
Diabetes (Keystone Symposia Z6)
Whistler, BC, Canada, Apr 12-17, 2010
|
4th ESF Conference on Functional Genomics and Disease
Dresden, Germany, Apr 14-17, 2010
|
International Conference on Research in Computational Molecular Biology (RECOMB2010)
Lisbon, Portugal, Apr 25-28, 2010
|
International Conference on Intelligent Systems for Molecular Biology (ISMB2010)
Boston, MA, Canada, Jul 11-13, 2010
|
Systems Biology: Networks (CSHL/WT)
Hinxton, UK, Aug 11-15, 2010
|
Genome Informatics (CSHL/WT)
Hinxton, UK, Sep 15-19, 2010
|
International Conference on Systems Biology (ICSB2010)
Edinburgh, Scotland, UK, Oct 11-14, 2010
|
UNIVERSITIES AND INSTITUTIONS
|
| Graz University of Technology (TUG) |
| Karl-Franzens-University Graz (KFUG) |
| National Institutes of Health (NIH) |
| The Institute for Genomic Research (TIGR) |
| Washington University in St Louis (WU) - Computational Biology |
| European Molecular Biology Laboratory (EMBL) |
| Whitehead Institute (MIT) |
| University of California, Santa Cruz (UCSC) - Computational Biology |
| European Bioinformatics Institute (EBI) |
| Yale University |
| Cold Spring Harbour Laboratory (CSHL) |
| Harvard University |
| The Jackson Laboratory (TJL) |
| Princeton University |
| National Center for Biotechnology Information (NCBI) |
| Stanford University |
| The Institute of Physical and Chemical Research (RIKEN) |
| San Diego Supercomputer Center (SDSC) |
| Research Institute of Molecular Pathology (IMP) |
| Instite for Molecular Biotechnology (IMBA) |
| Karolinska Institutet |
| Weizmann Institute of Science - Genome and Bioinformatics |
| Institut Pasteur |
| University of Cambridge |
| The Wadsworth Center |
| Berkeley Lab |
| German Cancer Research Center (DKFZ) |
| Los Alamos National Laboratory (LANL) |
| The Salk Institute for Biological Sciences |
| South African National Bioinformatics Institute (SANBI) |
| International Society for Computational Biology (ISCB) |
| Howard Hughes Medical Institute (HHMI) |
| Medical Research Council (MRC) |
| The Wellcome Trust |
| National Science Foundation |
| Austrian Science Fund (FWF) |
| Austrian Academy of Science |
| The Max Planck Society |
TOOLS
|
Promoter and regulatory sequence tools
|
| Ahab |
| Align ACE |
| ANN-Spec |
| Asap |
| BEST |
| BioProspector |
| BoCaTFBS |
| CEAS |
| Clover |
| ClusterBuster |
| CisRed |
| Cister |
| CisModule |
| CisView |
| CoMoDis |
| CompareProspector |
| Consensus |
| ConSite |
| CORE_TF |
| CORG |
| CREAD |
| CREME |
| CRSD |
| DiRE |
| DBTSS |
| Expander |
| GeneACT |
| Genomatix Tools |
| Gibbs Motif Sampler |
| GLAM |
| GRESA |
| The Improbizer |
| INCLUsive (MotifSampler, MotifScanner, MotifLocator) |
| MAPPER |
| MAST |
| Match |
| MatInspector |
| MatrixREDUCE |
| MDScan |
| MEME |
| MITRA |
| MoD Tools |
| Monkey |
| MotifExplorer |
| Motif Regressor |
| MotifSampler |
| MPromDb |
| MSCAN |
| MultiModule |
| NestedMICA |
| NHR Scan |
| NUBIScan |
| Oligo/dyad-analysis |
| OMG_Prom |
| oPOSSUM |
| ORegAnno |
| OTFBS |
| PASTAA |
| Phylofoot |
| PhyME |
| PReMod |
| Promoter Analysis Pipeline (PAP) |
| PromoterInspector |
| PromoSer |
| Pscan |
| QuickScore |
| REDUCE |
| Regulatory Sequence Analysis Tools |
| SeSiMCMC |
| Stubb |
| TAMO |
| TESS |
| TFM-Explorer |
| TFSEARCH |
| THEME |
| TOUCAN2 |
| TRES |
| VISTA |
| VOMBAT |
| WebMOTIFS |
| Weeder |
| W-ChIPMotifs |
| YMF |
MicroRNA target prediction
|
| Argonaute microRNA database · [1] |
| DIANA MicroT · [1] |
| ElMMo MiRNA Prediction Server · [1] |
| MAMI Meta Mir:target Interference |
| microInspector · [1] |
| miRacle |
| miRBase Targets · [1] |
| MiRanda · [1] |
| MiRecords · [1] |
| MiRex Infobase of microRNA gene expression |
| MiRGator · [1] |
| MiRGen · [1] |
| miRNAMap · [1] |
| miRNA - Target Gene Prediction at EMBL · [1,
2, 3] |
| MiRTar · [1] |
| miRU · [1] |
| miTarget · [1] |
| mirWIP · [1] |
| NBmiRTAR · [1] |
| PicTar · [1] |
| PITA · [1] |
| RNA22 · [2] |
| RNAhybrid · [1, 2] |
| STarMir · [1] |
| Tarbase · [1] |
| TargetBoost · [1] |
| TargetCombo · [1,
2,
3] |
| TargetScan/TargetScanS · [1, 2] |
Other sequence tools
|
| Annotator |
| BIOCCELERATOR |
| BLAST |
| ClustalW |
| CpG Islands |
| ExPASy Proteomic Tools |
| FASTA |
| Genie |
| GENSCAN |
| GlimmerM |
| Pratt |
| PSI-BLAST |
| Protein Explorer - RasMol |
| Repeatmasker |
| Reverse Complement Nucleotid Sequence |
| SAM |
| SIM4 |
| Swiss PdbViewer |
| Tandem Repeats Finder |
| The USC Sequence Alignment Server |
| UTR- extender |
| WebCutter |
| Wise2 |
NEXT GENERATION SEQUENCING
|
Integrated solutions
|
| CLCbio Genomics Workbench |
| Galaxy |
| Genomatix |
| JMP Genomics |
| NextGENe |
| SeqMan Genome Analyser |
| SHORE |
| SlimSearch |
|
Align/Assemble to a reference
|
| BFAST |
| Bowtie |
| BWA |
| ELAND |
| Exonerate |
| GenomeMapper |
| GMAP |
| gnumap |
| MAQ |
| MOSAIK |
| MrFAST and MrsFAST |
| MUMmer |
| Novocraft |
| PASS |
| RMAP |
| SeqMap |
| SHRiMP |
| Slider |
| SOAP |
| SSAHA |
| SOCS |
| SWIFT |
| SXOligoSearch |
| Vmatch |
| Zoom |
|
De novo Align/Assemble
|
| ABySS |
| ALLPATHS |
| Edena |
| EULER-SR |
| MIRA2 |
| SEQAN |
| SHARCGS |
| SSAKE |
| SOAPdenovo |
| VCAKE |
| Velvet |
|
SNP/Indel Discovery
|
| ssahaSNP |
| PolyBayesShort |
| PyroBayes |
|
Genome Annotation/Genome Browser/Alignment Viewer/Assembly Database
|
| EagleView |
| LookSeq |
| MapView |
| SAM |
| STADEN |
| XMatchView |
|
Counting e.g. CHiP-Seq, Bis-Seq, CNV-Seq
|
| BS-Seq |
| CHiPSeq |
| CNV-Seq |
| FindPeaks |
| MACS |
| PeakSeq |
| QuEST |
| SISSRs |
|
Alternate Base Calling
|
| Rolexa |
| Alta-cyclic |
|
Transcriptomics
|
| ERANGE |
| G-Mo.R-Se |
| MapNext |
| QPalma |
| RSAT |
| TopHat |
DATABASES
|
Gene expression databases
|
| ArrayExpress |
| Gene Expression Omnibus (GEO) |
| ChipperDB |
| Diabetes Genome Anatomy Project (DGAP) |
| Cancer Genome Anatomy Project |
| caARRAY (NCI) |
| EXALT |
| CELSIUS |
| Gene Expression Data Portal (NCI) |
| NIH Neuroscience Microarray Consortium |
| MUSC DNA Microarray Database |
| Public Expression Profiling Resource (PEPR) |
| Gene Expression Open Source System (GEOSS) |
| CleanEx |
| Genevestigator |
| Mouse Atlas of Gene Expression |
| GOLD.db |
| Macrophage Expression Atlas (GPXdb) |
| TIGR PGA Rat Data |
| ChipDB |
| The Gene Expression Database (GXD) |
| List of Lists Annotated (LOLA) |
| Stanford MicroArray Database (SMD) |
| yeast Microarray Global Viewer (yMGV) |
| Gene Expression Atlas |
| M-CHIPS |
| ONCOMINE |
| Human Gene Expression Index (HuGE Index) |
| READ: Riken Expression Array Database |
| BASE |
| EPConDB |
| GeneNote |
| RefExA |
| Cancer Gene Expression Database |
Lipidomics databases
|
| Cyberlipid Center |
| LIPID MAPS |
| Lipid Bank |
| LIPIDAG |
| LIPIDAT |
| Lipid Molecular Structure Database (LMSD) |
| Lipoxygenases Database (LOX-DB) |
| GOLD.db |
| The Lipid Library |
| Lipomics |
| LipidProfiles |
| European Lipidomics Initiative |
| Oxylipin Profiling Database |
| Sphingomap |
Sequence and other databases
|
| GenBank (NCBI) |
| EMBL - EBI |
| DDBJ |
| Feature Definition |
| Human Genome Resources (NCBI) |
| Human Genome - Golden Path (USCS) |
| Human and Drosophila Genome (Celera) |
| ENSEMBL (EBI, Sanger) |
| GOLD - Genome Projects |
| GDB - The Genome Database |
| Mouse Genome Informatics |
| FlyBase |
| The C. elegans Genome Project |
| The Zebrafish Information Network |
| The Arabidopsis Information Resource (tair) |
| Saccharomyces Genome Database (SGD) |
| TIGR - Comprehensive Microbal Resource (CMR) |
| SWISS-PROT and TrEMBL |
| Protein Information Resource (PIR) |
| MIPS |
| InterPro |
| Pfam |
| PROSITE |
| SMART |
| ProDom |
| PRINTS |
| BLOCKS |
| TIGRFAMs |
| Protein Domain Profile Analysis (BMERC) |
| PDB |
| SWISS-MODEL |
| BIND |
| DIP |
| KEGG |
| Unigene |
| TIGR - Gene Indices |
| Unigene |
| Stack |
| TRANSFAC |
| Eukaryotic Promoter Database (EPD) |
| Saccharomyces cerevisiae Promoter Database (SCPD) |
| GeneCards |
| NAR Database Listing |
| Health Sciences Library System |
| Databases on Medicine and Molecular Biology |
BIOINFORMATICS
|
| Bioinformatics and Genomics Resources |
| BCM - Search Launcher |
| Sequence Analysis Tools (NIH) |
| Biology WorkBench (SDSC) |
| EBI |
| NCBI |
| Pacific Symposium on Biocomputing - Proceedings |
| The International Society for Computational Biology |
| bioinformatik.de |
| ExPASy |
| The USC Sequence Alignment Server |
| BioNetbook |
| BMERC |
| Atelier BioInformartique (aBi) |
| Amos' links |
| Genamics SoftwareSeek |
| CMS Molecular Biology Resource |
| Bioplanet |
MICROARRAY LINKS
|
| Microarrays MediaBook |
| The Brown Lab - Stanford University |
| TIGR Microarray Resources |
| NHGRI - Microarray project |
| Microarray Centre Ontario Cancer Institute |
| The Genomics Group at the Children's Hospital of Philadelphia |
| UCLA Human Genetics DNA Microarray Core |
| Terry Speed's Microarray Data Analysis Group Page |
| The Rockefeller University Gene Array Facility |
| Weinstein Lab - NCI |
| Albert Einstein College of Medicine (AECOM) |
| Microarray Expression Data Analysis References |
| Microarrays.org |
| Stanford MicroArray Forum |
| Yahoo's e-group on Microarrays |
| Microarray Data Analysis Page - Rockefeller University |
| The Microarray Site - Nature Genetics |
| Gary Churchill's Statistcal Genetics Group |
| Stanford Microarray Database (SMD) |
| MicroArray Informatics at the EBI |
| Microarray Links (YF Leung) |
| Gene-Chips (Leming Shi) |
GLOSSARY
|
| Amino Acid Information |
| Biochemistry |
| BioMolecular Research Tools |
| Biotechnology Terms |
| Cell Biology Topics |
| Dictionary Cell and Mol Biology |
| DNA from the beginning |
| Genetics Science Learning Center |
| Genome Glossary |
| Genome Glossary (HGP) |
| Glossary of Genetic Terms |
| Image Library IMB Jena |
| Info Center ETHZ |
| IUPAC Nomenclature |
| MedBioWorld |
| MIT Biology Hypertextbook |
| Molecular Biology Protocols |
| NHGRI - Glossary of Genetic Terms |
| Online Textbooks Life Sciences |
| Primer on Molecular Genetics |
| Roche 4 Medizin Lexikon |
| A New View Of Statistics |
| Algorithms, Data Structures |
| BLAST Glossery |
| Numerical Recipes in C |
| StatSoft - Glossary |
| The Data Analysis BriefBook |
| The Bioinformatics Resource Page |
|
