NEWS AND UPDATES
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| 29 Sep 2010 | New Release - 1.7.6
 Semi-automatic cluster assignement after HCL
Use HCL from the command line without GUI
K-means Next Nearest Neighbor analysis
Gamma correction of color scales
Export entire gene list with cluster numbers
Log10 transform for better representation of p-values
Additional Sorting: Sort by Trend
Define cluster color and name in the same dialog
Extend "Data Table" panel
Extend the Eigenvalue table from PCA and CA
Allow Clipboard copy of "System Information" panel contents
Add "Cluster Information" to of clustering results
Change name of tree node for hierarchical clustering
PCA Eigenvector display in tabular form
Improve GO Database Connection Dialog
Fixed header width can be set from the View menu
Minimum and maximum for color scale can be set separately
Numerous bugfixes and improvements
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| 04 Mar 2009 | New Release - 1.7.5
Fixed behaviour of color options Single/Double
Filter option Coefficient of Variation added
Issue with displaying Genesis Server jobs fixed
Numerous bug fixes and improvements in the display
of clustering results
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| 28 Jan 2009 | New Release - 1.7.4
Problem with launching on Mac OS fixed
Improved color grouping features
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| 10 Nov 2008 | New Release - 1.7.3
Color Group definition added
Updated default GO Connection settings
Better handling of export to EPS format
Improved support for Linux and Mac OS
Numerous bug fixes and improvements
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| 22 Nov 2006 | New Release - 1.7.2
Import of Genepix result files fixed
Open file dialog behavior after using plugins fixed
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| 03 Nov 2006 | New Release - 1.7.1
Launch file for Mac OSX fixed
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| 14 Jul 2006 | New Release - 1.7.0
Numerous bug fixes and improvements
New demo license valid until 31 August 2006
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| 06 Jun 2005 | New Release - 1.6.0
Designed and developed for Java 5.0 (1.5.0)
New algorithm: Gene Expression Terrain Maps
New algorithm: Figure of Merit
Single gradient color schemes for e.g. Affymetrix data
Redesigned for the new GO database schemas
New GO overview page
Numerous bug fixes and improvements
New demo license valid until 31 July 2005
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| 01 Oct 2004 | New Release - 1.5.0
User definable properties for pie charts (Settings->Program properties)
New
saving of gene and sample similarity matrices
Numerous bug fixes and improvements
New demo license valid until 30 November 2004
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| 05 July 2004 | New Release - 1.5.0 Beta 1
Genes
can be searched in all cluster results and GO views
Automatic scrolling to search results.
New distance measurement: Chebychev distance.
User
definable links to external databases
Sorting genes by gene group affiliation.
New data adjustment: Divide Genes/Experiments by Variance
Numerous bug fixes and improvements
New demo license valid until 31 August 2004
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| 10 Mar 2004 | New Release - 1.4.0
Integration of the Gene Ontology (GO) into Genesis.
Graphical view of GO terms.
Mapping of gene clusters onto GO terms.
Saving of images as Scalable Vector Graphics (SVG)
Fixed header for better scrolling
Saving of ordered cluster gene and sample lists.
Merging of datasets now possible
Improved GenBank flat file reader for new GenBank format
Numerous bug fixes and improvements
New demo license valid until 30 April 2004
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| 17 Nov 2003 | New Release - 1.3.0
Saving of Project data (groups, settings, all clustering results)
in xml.
One-way ANOVA for detection of differentially expressed genes
Straightforward gene and sample group declaration
New Color configuration dialog with much more settings
Gradient painting in expression views
All gene tree functions also for sample trees
Complete rewriting of the code for better readability and maintenance
Improved GenBank flat file reader for new GenBank format
Numerous bug fixes and improvements
New demo license valid until 31 December 2003
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| 31 July 2003 | New Release - 1.2.2
Some bugs fixed
Java 1.4.2 now officially supported and recommended
Tree selections and clusters can now be saved as images
Windows XP and GTK+ look and feel supported
New start script for MacOSX (GenesisMacOSX)
New
start script for problems with DirectDraw (e.g. NVidia)
New demo license valid until 30 September 2003
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| 02 June 2003 | New Release - 1.2.1
Some bugs fixed
New demo license valid until 31 July 2003
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| 08 April 2003 | New Release - 1.2.0
Redesign
of the client-server communication using SOAP
Corresponence Analysis (CA)
Complete redesign of the PCA and CA 3D-views
Interactive
selecting of genes and/or experiments in the PCA view
Fullscreen 3D-view
Resetting the view to default values now possible
New Range (Min/Max) filter
Gene
groups and sample groups can be specified with an xml file
Recovery
system to prevent file corruption by a program termination
Better
pattern overview in SOM and KMC expression view
Some bugs fixed
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| 31 Oct. 2002 | New Release - 1.1.3
Tasposition of expression matrix now possible
Java 1.4.1 now officially supported and recommended
New demo license valid until 30 November 2002
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| 16 Sept. 2002 | New Release - 1.1.2
Unix, Linux and Max OS X starting problems fixed
Problem using older java releases (prior 1.4) fixed
Better debugging with system log in the program properties folder
New demo license valid until 31 October 2002
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| 03 Sept. 2002 | New Release - 1.1.1
Bugfix concerning Correlation Coefficients and KMC, SOM, SVM
Improved transparancy which distance function is in use.
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30 July 2002 | New Release - 1.1
Full client-server functionality for clustering
Sorting of genes (variety of different sorting methods)
Java 1.4 now officially supported and recommended
New demo license valid until 30 September 2002
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| 29 May 2002 | New Release - 1.0.2
Scanning of GenBank files can now be aborted
Saved images of GenBank entries now without the toolbar
Font problem with Java 1.4.0 solved
Mac OS X start script problem solved
Rollover effect in images can be turned off (useful for Mac OS X)
Case sensitive search option
Marking of genes in images from searches can be turned off
New demo license valid until 31 July 2002
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| 28 Mar 2002 | New Release - 1.0.1
Much better SVM results presentation (expression images, plots, etc.)
Full cluster functionality now also for SVM Results (public clusters....)
Search function for genes based on unique-ids or gene names
GenePix results file reader plugin
Java3D check before PCA results are displayed
GenBank flat-file parser improved (*.gbs files now supported)
New icons with 256 colors
New demo license valid until 31 May 2002
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| 12 Mar 2002 | New Release - Installation and Yeast data
New additional installation using InstallAnywhere
Latest yeast GenBank files from 10 March 2002 incorporated
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| 28 Feb 2002 | New Release - Licensing
New demo license valid until 31 March 2002
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| 17 Feb 2002 | New Release - Bug fixing
New thread architecture to fix problems with Linux Java 1.3.1
Minor changes to Genesis Look&Feel
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