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iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis
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| Gernot Stocker1, Maria Fischer1, Dietmar Rieder1, Gabriela Bindea1, Simon Kainz1, Michael Oberstolz1, James G. McNally2, Zlatko Trajanoski1§ |
| 1 | Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria |
| 2 | Center for Cancer Research Core Imaging Facility, Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, National Insitutes of Health, 41 Library Drive, Bethesda, MD 20892, USA |
| § | Corresponding author |
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| ABSTRACT: |
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iLAP (Laboratory data management, Analysis, and Protocol development) is a workflow-driven information
management system specifically designed to create and manage experimental protocols, and to analyze and
share laboratory data. iLAP combines protocol development, wizard-based data acquisition, and data analysis
into a single, integrated system. The functionality of the system is illustrated using a microscopy case
study based on multi-color fluorescence in situ hybridization and 3D-image reconstruction.
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MANUALS:
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Supplementary file 1 (iLAP_supplementary_material_file_1.pdf):
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 User manual which contains a detailed description of the user interface including screen shots.
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Supplementary file 2 (iLAP_supplementary_material_file_2.pdf):
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iLAP installation and administration manual which contains a detailed description of the installation process for all supported platforms
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PROTOCOLS:
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Supplementary file 3 (iLAP_supplementary_material_file_3.pdf):
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Example for a protocol for multiple complementary DNA in situ hibridization (MFISH) in PDF format
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Supplementary file 4 (iLAP_supplementary_material_file_4.pdf):
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 Example for a protocol for multiple complementary DNA in situ hibridization (MFISH) in XML format
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Supplementary file 5 (iLAP_supplementary_material_file_5.pdf):
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Document Type Definition of the defined XML file format, which aims to define a common xml format for iLAP and the [ OMERO Editor ]
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APPLICATION PROGRAMMING INTERFACES:
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 AnalysisPluginInterface: JAVA interface for server side analysis plugins
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ConnectionManagerInterface: JAVA interface for accessing data within iLAP
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... for further details please read the corresponding manual section
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LINKS:
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[ iLAP-Demo ] Installation with example files, analysis steps etc.
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[ Download ] site for the most recent iLAP version
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