Date Content Exercise Data files Links and further information   02.06.2014 08:00 R Introduction [pdf] Exercise 1 [pdf] R code used on the slides [R] classroom.csv [csv] placebo.csv [csv] placebo_des.txt [txt] An Introduction to R [pdf]   02.06.2014 14:00 Microarray analysis[pdf] Exercise 2 [pdf] Bioconductor microarray.zip genelist.txt clustering R, Bioconductor manuals   03.06.2014 08:00 MicroRNA Analysis [pdf] Exercise 3 [pdf] BP-overrepresented.html target_genes.csv GOstats RCurl XML miRBase miRWalk Gene Ontology   04.06.2014 08:00 Network Analysis[pdf] Exercise 4 [pdf] transcription factors targets gene expression profiles igraph Cytoscape   06.06.2014 08:00 Microbiome Analysis [pdf] Exercise 5 [pdf] OTU summary matrix Summary matrix description edgeR   16.06.2014 09:00 Presentations I Anzengruber Benedikt Deckert Gall Gruber Kneriger Evolving Digital Ecological Networks ... statistical considerations for microarray meta-analysis Towards the understanding of microRNA and environmental ... Network motifs provide signatures that characterize ... Peroxidase gene discovery from the horseradish ... Waste Not, Want Not: Why Rarefying Microbiome Data Is ...   16.06.2014 15:00 Presentations II Madritsch Schmidt Singhania Wallner Wöhrer Integrative omics analysis. A study based on Plasmodium ... On a fundamental structure of gene networks in living cells Integrative systems biology: an attempt to describe ... Integrative analysis of gene and miRNA expression ... Genome-Wide Quantitative Enhancer Activity Maps Identified ...