The quantitation pages for “Quantitation” and “Batch Quantitation” look similar. The difference is that for “Quantitation” the file chooser requires a single file, whereas in “Batch Quantitation” a directory containing the files to quantify and a directory containing the Excel mass list files is required.
In contrast to the normal quantitation, in batch mode, a list will appear that shows the progress of the quantitation. The files receive a green check mark, if they are quantified successfully. If not, a red X.