Date Content Exercise Data files Links and further information
  02.06.2014 08:00 R Introduction [pdf] Exercise 1 [pdf] R code used on the slides [R]
classroom.csv [csv]
placebo.csv [csv]
placebo_des.txt [txt]
An Introduction to R [pdf]
  02.06.2014 14:00 Microarray analysis[pdf] Exercise 2 [pdf] Bioconductor
microarray.zip
genelist.txt
clustering
R, Bioconductor manuals
  03.06.2014 08:00 MicroRNA Analysis [pdf] Exercise 3 [pdf] BP-overrepresented.html
target_genes.csv
GOstats
RCurl
XML
miRBase
miRWalk
Gene Ontology
  04.06.2014 08:00 Network Analysis[pdf] Exercise 4 [pdf] transcription factors targets
gene expression profiles
igraph
Cytoscape
  06.06.2014 08:00 Microbiome Analysis [pdf] Exercise 5 [pdf] OTU summary matrix
Summary matrix description
edgeR
  16.06.2014 09:00 Presentations I Anzengruber
Benedikt
Deckert
Gall
Gruber
Kneriger
Evolving Digital Ecological Networks
... statistical considerations for microarray meta-analysis
Towards the understanding of microRNA and environmental ...
Network motifs provide signatures that characterize ...
Peroxidase gene discovery from the horseradish ...
Waste Not, Want Not: Why Rarefying Microbiome Data Is ...
  16.06.2014 15:00 Presentations II Madritsch
Schmidt
Singhania
Wallner
Wöhrer
Integrative omics analysis. A study based on Plasmodium ...
On a fundamental structure of gene networks in living cells
Integrative systems biology: an attempt to describe ...
Integrative analysis of gene and miRNA expression ...
Genome-Wide Quantitative Enhancer Activity Maps Identified ...