Date
|
Content
|
Exercise
|
Data files
|
Links and further information
|
02.06.2014 08:00
|
R Introduction
[pdf]
|
Exercise 1
[pdf]
|
R code used on the slides
[R]
classroom.csv
[csv]
placebo.csv
[csv]
placebo_des.txt
[txt]
|
An Introduction to R
[pdf]
|
02.06.2014 14:00 |
Microarray analysis[pdf] |
Exercise 2
[pdf] |
Bioconductor
microarray.zip
genelist.txt
|
clustering
R, Bioconductor manuals
|
03.06.2014 08:00 |
MicroRNA Analysis [pdf] |
Exercise 3 [pdf] |
BP-overrepresented.html
target_genes.csv
|
GOstats
RCurl
XML
miRBase
miRWalk
Gene Ontology
|
04.06.2014 08:00 |
Network Analysis[pdf] |
Exercise 4 [pdf] |
transcription factors targets
gene expression profiles |
igraph
Cytoscape
|
06.06.2014 08:00
|
Microbiome Analysis
[pdf]
|
Exercise 5
[pdf]
|
OTU summary matrix
Summary matrix description
|
edgeR
|
16.06.2014 09:00
|
Presentations I
|
Anzengruber
Benedikt
Deckert
Gall
Gruber
Kneriger
|
Evolving Digital Ecological Networks
... statistical considerations for microarray meta-analysis
Towards the understanding of microRNA and environmental ...
Network motifs provide signatures that characterize ...
Peroxidase gene discovery from the horseradish ...
Waste Not, Want Not: Why Rarefying Microbiome Data Is ...
|
16.06.2014 15:00
|
Presentations II
|
Madritsch
Schmidt
Singhania
Wallner
Wöhrer
|
Integrative omics analysis. A study based on Plasmodium ...
On a fundamental structure of gene networks in living cells
Integrative systems biology: an attempt to describe ...
Integrative analysis of gene and miRNA expression ...
Genome-Wide Quantitative Enhancer Activity Maps Identified ...
|